Stock water pump should fit. As far as i know the p/n didnt change just a change in the design of the impeller. You would have to visually look at it to determine what year. I might be mistaken but i think the 03/04 have 7 bladed shrouded impeller as opposed to the earlier 8 bladed open fin design.:shrug:
Ford did make a change in the water pump design in 03, so I would think it would cover all year Lightnings, 99-04, the new design uses a shrouded impeller wich makes the water pump able to move more water.