Man that is a bad ass build right there!
I run AER endurance racing in an 87' Cougar with stock 15' Mustang GT engine and tranny. Where did you source your hydro boost setup from? We're running a Wilwood pedal setup but just can't seem to get the balance we need with pedal travel and effort. We've considerd going the hydro boost route. I ran that on my AS Mustang when I ran SCCA and loved the consistency of the pedal.
Please keep updating photos and info during your build.
We have not done anything with the hydro boost set up yet. The one I have is a Ford Mustang factory piece, out of a later model car. I can find out the year. With the coyote engine being so big, there is no room for a booster. So its either manual brakes or hydroboost. I hate manual brakes. My other fox body mustang that was a track only car made 500 rwhp, had SN 95 brakes with Hawk blue pads in the front, and Porterfield R1 pads in the rear. That was the best set up.