Is the dyno on 93 octane or race gas? Your tune should be adjusted for modifications such as headers and pullies. This doesn't sound right to me.
No tune update is needed as long as your not on the ragged edge timing wise. If your running an aggressive tune and running 91/93 i would suggest verifying with the tuner that the timing is good for the additional air.
The maf reads how much air is going into the motor and adjust the fuel for it. Doesn’t matter if it’s a 2.6 or a 2.4 pulley it will just move the fuel and spark to the next point on the map. Same thing with headers a little more air gets picked up and a little more fuel gets added.
The only thing for headers would be the transport delay could be adjusted.
This is why some people swap from say a 2.9 whipple to a 4.0 whipple without a tune change for dyno comparisons and it doesn’t blow up. I would suggest looking at the logs to verify.