I did this swap years ago. Keep the 01 harness. Extend the IAT wires to the lower intake where the IAT2 is located on the eaton cars. The alternator wiring isn't hard either. I bought the pigtail for the alternator and the IAT2 and wired them in. I also ran the 03 tank and it bolted right in. I don't have the alternator wiring diagram, but I did have the ones that show how to run the IAT2 sensor off the IAT1 wiring. Hope these help.