Man it looks like you found a mess, Hope you get it figured out, seems to be a bad week for electrical problems, my work truck several trailers this week and my buddy's work truck too.
Update:
I ran this
Tests
Remove FP relay from socket:
1. Jumper from PNK/BLY to DGRN/YEL. Pump runs yes/no? (key can be on or off, doesnt matter)
2. Jumper from RED to LBLU/ORG. Pump runs yes/no? (key must be on)
3. Check continuity of LBLU/ORG to GND. Connect ohmeter between LBLU/ORG and GND then turn key to ON. Continuity should be for 1-2sec then open.
Came out like this: 1. Pump on 2. No pump 3. Chck out as deceived
Are you running a stock '93 Cobra MAF? If so, I would think you will need to swap to a stock 5.0 MAF since any non X3Z ecu will have a different MAF curve in it. If you have an aftermarket MAF, you might be able to get away with just putting the chip in the A9L and running it that way.
It's a C&L meter. I actually called my tuner (gearheads in Arlington tx) and they actually have a cobra ecu. I'm gonna head over after work, I'll post the results tonight. Maybe a qtr mile time also
I put the a9l in and it's running again seems to be fine. I retarded the timing to 10* an I'm gonna get a dyno session in this week to verify everything and I'm putting a lightning MAF on at the same time.
I appreciate all the help Buddha and everybody else, big ups fellas.