So I picked up the car and Holley is taking the NOS controller back. The wiring looks damn near stock (pics will come later). The install cost me $2000. They were good guys about the situation and dropped 5 hours as well as offered to install the new progressive controller for free.
2k? Wowzers. The installation for my twin turbo build + tuning times is only 1k more. But nothing you can do now.
Enjoy the giggle gas. Spray and pray!